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Image Informatics and Computational Biology Unit Image Collections -- An in situ hybridization-based screen for heterogeneously expressed genes in mouse ES cells. Carter MG, Stagg CA, Falco G, Yoshikawa T, Bassey UC, Aiba K, Sharova LV, Shaik N, Ko MS. Gene Expression Patterns. 2008 Feb;8(3):181-98. Epub 2007 Nov 4. [PubMED] IICBU 2008: a proposed benchmark suite for biological image analysis. Shamir L, Orlov N, Eckely DM, Macura T, Goldberg IG. Medical and Biological Engineering and Computing. 46(9): 943-7, 2008. [PubMed] [local PDF] Software -- Wndchrm - an open source utility for biological image analysis. Shamir L, Orlov N, Eckley DM, Macura T, Johnston J, Goldberg IG. Source Code for Biology and Medicine. 3: 13, 2008. [PubMed] [local PDF] This utility implements the WND-CHARM algorithm described in: WND-CHARM: Multi-purpose image classification using compound image transforms. Orlov N, Shamir L, Macura T, Johnston J, Eckley DM, Goldberg IG Pattern Recognition Letters. 29(11): 1684-93, 2008. [PubMed] [local PDF]

For More Information Ilya Goldberg, Ph.D.

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Updated: April 14, 2009